I have seen it several times. Either too high/nearing max pressure, or too heavy or a firing pin spring, or more likely, a combination of those. The times I have seen it were in a few 98 mausers. You likely have too heavy of a firing pin spring for use with small rifle primers, you most likely would be able to make it work with a lighter spring. However, the proper way is as stated, a lighter spring, smaller firing pin, and having the firing pin hole bushed. Bushing the firing pin will also fix any issues with premature primer cratering appearing. If cratering shows up after being properly bushed, your at or near the max for your components.
If you don't want to pay to have it worked on, do what barrelnut stated, try cci primers. Especially the magnum primers, I have noticed they don't crater as much if you have a sloppy firing pin hole.