BML,
Probably you pushed the shoulder too far and now the case has too much head space.That can cause the firing pin to knock the case forward rather than igniting the primer.Also,if I am correct, it can cause the brass to fail by case head separations after a few firings due to the stretching that occurs as the case re-elongates with firing.
The best way to keep your head space correct is to get head space gauges that fit your calipers or if you do a lot of different calibers, get the Innovative Technologies head space gauge which easily adjusts to every caliber I have except 50BMG.
Innovative Technologies - Reloading Equipment
Head space gauges will allow you to adjust your dies to push the shoulder back just a couple thousandths giving excellent uniformity and better brass life.The technique you used sounds reasonable, but I still would put my money on too much head space.
Darrel